Genomics Guide

This section covers Databricks runtimes and frameworks that provide support for developing genomics applications.

Important

The Databricks genomics applications require Databricks Runtime HLS, which is in Beta. Sign up for access.

• Databricks Runtime for Health and Life Sciences
  • What’s inside?
• DNASeq Pipeline
  • Setup
  • Parameters
  • Reference genomes
  • Manifest format
  • Supported input formats
  • Output
  • Running programmatically
• RNASeq Pipeline
  • Setup
  • Parameters
  • Walkthrough
  • Additional usage info
• Tumor/Normal Pipeline
  • Walkthrough
  • Setup
  • Parameters
  • Reference genomes
  • Manifest format
  • Additional usage info
• Hail 0.2
  • Create a Hail cluster
  • Use Hail in a notebook
  • Limitations
  • Example Notebook
• Working with Variant Data
  • VCF
  • BGEN
• Analyzing Genomes with VariantSpark
  • Example notebook