Genomics

This section highlights frameworks that provide support for developing genomics applications on Apache Spark.

Important

The Databricks genomics applications are currently in Beta. Sign up for access.

• Databricks Runtime for Health and Life Sciences
  • What’s inside?
• DNASeq Pipeline
  • Setup
  • Parameters
  • Manifest Format
  • Output
  • Running programmatically
• RNASeq Pipeline
  • Setup
  • Parameters
  • Walkthrough
  • Additional usage info
• Hail 0.2
  • Create a Hail cluster
  • Use Hail in a notebook
  • Limitations
  • Example Notebook
• Analyzing Genomes with VariantSpark
  • Example notebook
• Overlap Join
  • Usage
  • Configuration
  • Example