Joint genotyping

Important

This documentation has been retired and might not be updated. The products, services, or technologies mentioned in this content are no longer supported.

The Databricks Genomics runtime has been deprecated. For open source equivalents, see repos for genomics-pipelines and Glow. Bioinformatics libraries that were part of the runtime have been released as a Docker container, which can be pulled from the ProjectGlow Dockerhub page.

For more information about the Databricks Runtime deprecation policy and schedule, see All supported Databricks Runtime releases.

Aggregate genetic variants using the GATK GenotypeGVCF implemented on Apache Spark.

• Joint genotyping pipeline
  • Walkthrough
  • Setup
  • Reference genomes
  • Parameters
  • Output
  • Manifest format
  • Troubleshooting
  • Additional usage info